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  Dr. MATTHEW MCCALL  
 
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Title : Dr.
First Name : MATTHEW
Last Name : MCCALL
University/Institution : University of Rochester
Phone # : 585-273-3177
Email ID : matthew_mccall@urmc.rochester.edu
City : Rochester
Country : United States
State : New york
Zipcode : 14642
Department : Biostatistics and Computational Biology
Company Name :
Area of Research
Statistical Genomics / Network Modeling / Systems Biology
Area of Expertise
Microarray Preprocessing / Statistical Genomics / Network Modeling
Brief Description of Research Interest :
I am a postdoctoral fellow working with Anthony Almudevar in the Department of Biostatistics and Computational Biology at the University of Rochester Medical Center. My research interests are in statistical genomics and systems biology, with an emphasis on clinical applications of genomic technology and estimation of gene regulatory networks.
Representative Publications :
Barry CT*, D'Souza M, McCall MN, Safadjou S, Ryan C, Kashyap R, Marroquin C, Orloff M, Almudevar A, Godfrey TE (2012). Micro RNA Expression Profiles as Adjunctive Data to Assess the Risk of Hepatocellular Carcinoma Recurrence After Liver Transplantation, American Journal of Transplantation, 12:428-437. [link]

McCall MN* and Almudevar A (2011). Affymetrix GeneChip microarray preprocessing for multivariate analyses, Briefings in Bioinformatics, doi: 10.1093/bib/bbr072. [link]

McCall MN, Kent OA, Yu J, Fox-Talbot K, Zaiman AL, Halushka MK* (2011). MicroRNA profiling of diverse endothelial cell types, BMC Medical Genomics, 4:78. [link]
Highly Accessed.

Almudevar A, McCall MN*, McMurray H, Land H (2011). Fitting Boolean Networks from Steady State Perturbation Data, Statistical Applications in Genetics and Molecular Biology, 10(1): Article 47. [link]

McCall MN*
 and Irizarry RA (2011). Thawing Frozen Robust Multi-array Analysis (fRMA), BMC Bioinformatics, 12:369. [link]
Highly Accessed.

McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA* (2011). Assessing Affymetrix GeneChip Microarray Quality, BMC Bioinformatics, 12:137. [link]
Highly Accessed.

McCall MN, Uppal K, Jaffee HA, Zilliox MJ*, and Irizarry RA* (2011). The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes, Nucleic Acids Research, 39:D1011-5. [link]

Shi L*, Campbell G, Jones WD, . . . , McCall MN, . . . , Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium (2010). The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models, Nature Biotechnology, 28(8):827-38. [link]

McCall MN, Bolstad BM, and Irizarry RA* (2010). Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, 11(2):242-253. [link]

Sachin S, McCall MN, Eveleigh D, Wilson M, and Irizarry RA* (2010). Performance Evaluation of Commercial miRNA Expression Array Platforms, BMC Research Notes, 3:80. [link]
Highly Accessed.

McCall MN and Irizarry RA* (2008). Consolidated strategy for the analysis of microarray spike-in data, Nucleic Acids Research, 36(17), e108. [link]
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